DNA Symphony: A new method to Represent Genomic Sequences

Authors:

Rosario A. Medina Rodríguez. University of São Paulo. Brazil.
Harieth M. Bernedo Cordova. San Pablo Catholic University. Perú.
Jesús P. Mena-Chalco. Federal University of ABC. Brazil.

Selected Genomes

Genomic Signatures for Different K-mer Sizes
Specie [ 2 ] [ 3 ] [ 4 ] [ 5 ] [ 6 ] FASTA
Clostridium Acetobutylicum
Escherichia Coli
Mycobacterium Leprae
Mycobacterium Tuberculosis
Vibrio Cholerae
Sulfolobus Solfataricus
Musa Acuminata
Secale Cereale
Solanum Tuberosum
Lama Glama
Vicugna Pacos
Puma Concolor


Polyphonic Representation

Synchronized Polyphonic Sound
Specie K-mer Sizes One Instrument Different Instruments
Clostridium Acetobutylicum 2 - 3 - 4 - 5 - 6

Escherichia Coli

Mycobacterium Leprae

Mycobacterium Tuberculosis

Vibrio Cholerae

Sulfolobus Solfataricus

Musa Acuminata

Secale Cereale

Solanum Tuberosum

Lama Glama


Same Family
  -   Lama Glama
  -   Vicugna Pacos
  -   Puma Concolor 		4

2 - 4 - 6

  -   Escherichia Coli
  -   Vibrio Cholerae 		4

  (*)

  -   Clostridium Acetobutylicum
  -   Escherichia Coli
  -   Mycobacterium Leprae
  -   Mycobacterium Tuberculosis
  -   Vibrio Cholerae


Different Families
  -   Secale Cereale
  -   Mycobacterium Leprae 		4

  (*)

  -   Sulfolobus Solfataricus
  -   Secale Cereale

  -   Secale Cereale
  -   Solanum Tuberosum
  -   Lama Glama
  -   Vicugna Pacos
  -   Puma Concolor

  -   Solanum Tuberosum
  -   Escherichia Coli
  -   Puma Concolor
  -   Mycobacterium Leprae
  -   Secale Cereale
  -   Clostridium Acetobutylicum 		1 - 2 - 3 - 4 - 5 - 6 - 7

  (*)

The rows selected with (*) represent the experiments described on the extended abstract (pdf file at the top of the page).